NAME

       TIFFToDicom  -  Read a TIFF image input format file and create an image of a specified or appropriate SOP
       Class.

SYNOPSIS

       TIFFToDicom    jsonfile    inputFile    outputFilePrefix    [modality    [SOPClass     [TransferSyntax]]]
       [ADDTIFF|DONOTADDTIFF] [USEBIGTIFF|DONOTUSEBIGTIFF] [ALWAYSWSI|NOTALWAYSWSI] [ADDPYRAMID|DONOTADDPYRAMID]
       [MERGESTRIPS|SPLITSTRIPS]     [ADDDCMSUFFIX|DONOTADDDCMSUFFIX]     [INCLUDEFILENAME|DONOTINCLUDEFILENAME]
       [CHANNELFILE  channelfile]  [SPACINGMM  spacingmm]  [SPACINGROWCOLMM   spacingrowmm(y)   spacingcolmm(x)]
       [THICKNESSMM thickness]

DESCRIPTION

       Error: Incorrect number of arguments or bad arguments

OPTIONS

        jsonfile - JSON file describing the functional groups and attributes and values to be added or replaced
        inputFileName -
        outputFilePrefix -
        outputFileSuffix -
        modality - may be null
        sopClass - may be null
        transferSyntax  -  may  be  null,  used  if multiframe, ignored if single frame (which is always written
       uncompressed)
        addTIFF - whether or not to add a TIFF IFD in the DICOM preamble to make a  dual=personality  DICOM-TIFF
       file sharing the same pixel data
        useBigTIFF - whether or not to create a BigTIFF rather than Classic TIFF file
        alwaysWSI  -  whether  or  not to add WSI-related information even if not WSI SOP Class, e.g., for float
       converted to parametric map
        addPyramid - whether or not to add multi-resolution pyramid (downsampled) layers to the TIFF IFD  and  a
       corresponding DICOM private data element in the same file
        mergeStrips - whether or not to merge an image with more than one strip into a single DICOM image, or to
       create a separate image or frame for each strip
        channelFile - may be null
        includeFileName - whether or not to record the original filename in the DICOM output
        spacingrowmm  - PixelSpacing 1st value - spacing between adjacent rows (i.e. "y" spacing) (in mm) to use
       to override base layer spacing in case it is incorrect or not present (may be 0 if not supplied)
        spacingcolmm - PixelSpacing 2nd value - spacing between adjacent columns (i.e. "x" spacing) (in  mm)  to
       use to override base layer spacing in case it is incorrect or not present (may be 0 if not supplied)
        thicknessmm - SliceThickness and ImagedVolumeDepth value (in mm) to use (may be 0 if not supplied)

EXAMPLES

       $ TIFFToDicom /etc/pixelmed/TIFFToDicom.WSI.json CMU-1.svs my_wsi SM 1.2.840.10008.5.1.4.1.1.77.1.6

AUTHOR

       This manual page was written by Mathieu Malaterre <malat@debian.org> for the Debian GNU/Linux system (but
       may be used by others).

SEE ALSO

       OrthancWSIDicomizer

TIFFToDicom 20220313                               March 2022                                     TIFFTODICOM(1)