NAME

       NanoLyse - remove lambda phage reads from a fastq file

SYNOPSIS

       NanoLyse [-h] [-v] [-r REFERENCE] [--logfile LOGFILE]

DESCRIPTION

       Remove reads mapping to the lambda genome. Reads fastq from stdin and writes to stdout.

OPTIONS

   optional arguments:
       -r, --reference REFERENCE
              Specify a reference fasta file against which to filter.

       --logfile LOGFILE
              Specify the path and filename for the log file.

   General options:
       -h, --help
              show the help and exit

       -v, --version
              Print version and exit.

EXAMPLES:

              gunzip   -c   reads.fastq.gz   |   NanoLyse  |  gzip  >  reads_without_lambda.fastq.gz  gunzip  -c
              reads.fastq.gz | NanoLyse | NanoFilt -q 12 | gzip > filtered_reads_without_lambda.fastq.gz  gunzip
              -c reads.fastq.gz | NanoLyse --reference mygenome.fa.gz | gzip > reads_without_mygenome.fastq.gz

AUTHOR

        This manpage was written by Andreas Tille for the Debian distribution and
        can be used for any other usage of the program.

NanoLyse 1.1.1                                      June 2020                                        NANOLYSE(1)