NAME

       gapcleaner - Find the most-parsimonious ordering of indels

SYNOPSIS

       gapcleaner <multi-FASTA or Stockholm alignment>

DESCRIPTION

       gapcleaner from FSA 1.15.9

       Find the most-parsimonious ordering of indels.  Finds the minimal chain decomposition of the POSET of the
       alignment; this corresponds to minimizing the number of gap-openings across the sequences.

       Input protein alignment must be in multi-FASTA or Stockholm format.

AUTHOR

       This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage
       of the program.

gapcleaner 1.15.9                                 December 2015                                    GAPCLEANER(1)